To identify previously unrecognized responses triggered by KIR2DS1 or KIR2DL1

binding to HLA-C2, Xiong et al. performed microarray-based selleck chemicals genomic profiling of the following four dNK subpopulations: KIR2DS1+, KIR2DL1+, KIR2DS1+KIR2DL1+, and KIR2DS1–KIR2DL1– [49]. KIR2DS1+KIR2DL1+ dNK cells exhibited different responses than the KIR2DL1+ single-positive dNK cells, whereas only HLA-C2-activated KIR2DS1+ dNK cells produced several soluble products, such as GM-CSF, that enhanced the migration of primary trophoblast and JEG-3 trophoblast cells in vitro [49]. These findings provide a possible molecular mechanism for the fact that expression of activating KIR receptors on maternal dNK cells can be beneficial for placentation. The liver is an immunotolerant organ containing a large proportion of innate immune PF-02341066 price cells such as NK cells, NKT cells, γδT cells, and macrophages [50]. These immune cells play an important role in inhibiting autoimmune diseases as well as in maintaining immunotolerance and homeostasis [51]. In humans, 30–50% of

intrahepatic lymphocytes are NK cells [52]. In mice, NK cells account for approximately 10–15% of intrahepatic lymphocytes and can be divided into two distinct subpopulations: CD49a+DX5– and CD49a–DX5+ NK cells [51, 53]. We performed gene expression microarray analysis of ∼22 000 genes to explore the differences in the transcriptional signatures of hepatic DX5– and DX5+ NK cells in mice [53]. Although nearly half of the tested genes were identically expressed between the DX5– and DX5+ NK-cell subpopulations, these TCL two subpopulations were distinct from each other in the following ways: among the 1507 genes found to be significantly different between the subpopulations, 566 genes enriched in DX5– NK cells were associated with negative regulation and immune tolerance, while the 941 genes enriched in DX5+ NK cells were instead associated with migration,

proliferation, immune responses, and cell maturation [53]. DX5– NK cells expressed relatively high numbers of genes related to IL-17 production and Th17-cell development (including Il21r, Rora, and Ahr) [54] as well as genes preferentially expressed by Treg cells (including LAG-3, Helios, and Egr-2) [55, 56], raising the possibility that DX5– NK cells might exert negative regulatory control within the liver. Microarray datasets are not only used to find previously unrecognized gene changes under various conditions but also to establish a molecular definition of cell identity. Clustering and other classical techniques, such as principal component analysis (PCA), are useful methods for analysis of gene expression data [41, 57]. The relatedness of NK-cell subpopulations to each other and to other leukocyte populations have been investigated using hierarchical clustering or PCA.