This data led us to hypothesize that, besides the hemocidin Hb 33–61 [8], the newly identified peptide Hb 98–114 may be endogenously generated through the Selleckchem Bioactive Compound Library catalytic activity of acidic gut endoproteinases

and may constitute an important antimicrobial agent for midgut defense. The mode of action of most hemocidins is still debatable, but seems to involve the disruption of the microorganism plasma membrane. This is corroborated by the structure elucidation of Hb 33–61a [36] as well as one of its truncated analogs by 1H NMR in micelles of SDS [22], indicating that these hemocidins possess an amino-terminal region that anchors and stabilizes them into the SDS micelle, whereas a carboxy-terminal alpha helical region may be responsible for membrane permeabilization. Additionally, it has been shown that other hemocidins generated through proteolytic digestion in vitro contain a high α-helical content [28] and may possess a similar mode of action

as Hb 33–61a. The hemocidin Hb 98–114 is unstructured in aqueous solution in the absence of micelles, as revealed by its characteristic CD and 1H NMR spectra. In fact, several antimicrobial peptides are unstructured in solution, Thiazovivin cell line but become helical in the presence of membranes. To test this hypothesis we measured the spectra also in the presence of SDS micelles as a membrane model. Indeed, in the presence of SDS micelles, Hb 98–114 became structured, as its 1H NMR and CD spectra showed characteristic features of helical content as a shift of amidic and alpha-protons upfield in the 1H NMR spectrum Methocarbamol (Figs. 3B and 6A) and two negative peaks at 208 and 222 nm in the CD spectrum (Fig. 3A). In the CD spectra in the presence of SDS,

the peak at 208 nm is more intense than the peak at 222 nm. This suggests that the peptide should be in a dynamic equilibrium between a population of random coil molecules in water and a population of helical molecules in SDS. Moreover, the chemical shift index calculated for each alpha-hydrogen showed higher deviations from the random values for the residues present in the middle of the primary sequence (e.g. Δδ = −0.75 ppm for V107) and smaller deviations for residues in the N- and C-termini (e.g. Δδ = −0.19 and −0.16 ppm for L101 an H112 respectively), as observed in Fig. 6A. This profile of chemical shift index reflects the higher stability of the helix in the central residues, while in peripheral residues the structure could fluctuate more between a helical and random coil conformation. Antimicrobial peptides that are pore-forming are often amphipathic helices [3]. In the NMR structure of Hb 98–114 shown in Fig. 5 we can notice that the helix is amphipathic in the segment from S104 to P114, and this pattern is broken in the N-terminus from residues F98 to H103. This structural feature could explain the membrane destabilizing capability of Hb 98–114.