In CNRZ368, excision rates Alectinib of ICESt3 were higher than those of ICESt1 (Figure 5). Furthermore, the quantification showed a single copy of ICESt3 (1.08 ± 0.11) per chromosome even after MMC exposure (compared to 9.60 ± 1.04 copies in strain CNRZ385). This indicates a preponderant effect of the host strain on the ICE replication. Figure 5 Strain effect on ICE excision. qPCR amplification was performed on total DNA extracted from cells harvested during exponential growth in LM17 medium at OD600 nm = 0.6

(expo0.6) or treated for 2.5 hours by MMC at MIC/2 and harvested at OD600 nm = 0.6 (MMC). ICE and host strains studied are indicated below. ICESt3, in strains CNRZ368 and PI3K inhibitor LMG18311, was tagged with the cat gene, conferring chloramphenicol resistance, for transconjugant selection. To avoid ICE interference, strain CNRZ368 was previously deleted of ICESt1 prior ICESt3cat transfer. Excision percentage is calculated as (attB/fda)×100. Data are presented as average and standard deviation from three independent replicates. A family of streptococcal ICEs shares related regulation and conjugation modules Protein and nucleic acid sequences from the regulation, conjugation and recombination modules of ICESt1 and ICESt3 were compared with sequences from firmicutes. Closely related conjugation

modules (> 80% nucleotide identity all along the conjugation module) were found in the putative ICESpn8140 from S. pneumoniae 8140 [22] and in the partially or completely sequenced genomes of S. parasanguinis ATCC15912 and

F0405, S. infantis Clomifene ATCC 700779 and S. australis ATCC700641 (Figure 6). All these conjugation modules are adjacent to putative recombination modules that are unrelated or very distantly related to the ones of ICESt1/3 (data not shown). Nevertheless, they could be cotranscribed with the conjugation module from a Pcr promoter similar to the one identified above since it is present at the same position as in ICESt1/3 with high sequence conservation (see additional file 2: S2A). Therefore, these conjugation-recombination modules probably belong to non identified ICEs. Figure 6 Comparison of the conserved structure of streptococcal ICEs. ICE names or host strain names are mentioned on the right. ORFs location and orientation of each ICE are indicated by arrowed boxes. Above, ORF names are abbreviated with the corresponding letter or number. The pattern of the arrowed boxes depicts the related ORFs, homologs to ICESt3 regulation and conjugation genes deduced from functional analyses or from BLAST comparisons. The grey areas indicate closely related sequences between GIs (> 70% nucleotide identity); the identity percentage between pairs of GIs is given. Homologous ORFs of unknown function and unrelated ORFs are represented by black or white arrowed boxes, respectively.