Proc Natl Acad Sci USA 1986, 83:6297–301.CrossRefPubMed 14. Takano K, Nakabeppu Y, Sekiguchi M: Functional sites of the Ada regulatory protein of Escherichia coli. Analysis by amino acid substitutions. J Mol Biol 1988, 201:261–271.CrossRefPubMed 15. Joyce AR, Palsson BØ: The model organism as a system: integrating ‘omics’ data sets. Nat Rev Mol Cell Biol 2006, 7:198–210.CrossRefPubMed
16. Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, Eng JK, Bumgarner R, Goodlett DR, Aebersold R, Hood Proteasome inhibition L: Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 2001, 292:929–934.CrossRefPubMed 17. Yoon SH, Han MJ, Lee SY, Jeong KJ, Yoo JS: Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture. Biotechnol Bioeng 2003, 81:753–767.CrossRefPubMed ITF2357 ic50 18. Duy NV, Mäder U, Tran NP, Cavin JF, Tam LT, Albrecht D, Hecker M, Antelmann H: The proteome and transcriptome analysis of Bacillus subtilis
in response to GDC-0449 cell line salicylic acid. Proteomics 2007, 7:698–710.CrossRefPubMed 19. Nguyen VD, Wolf C, Mäder U, Lalk M, Langer P, Lindequist U, Hecker M, Antelmann H: Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis. Proteomics 2007, 7:1391–1408.CrossRefPubMed 20. Landini P, Busby SJ: Expression of the Escherichia coli ada regulon in stationary phase: evidence for rpoS-dependent negative regulation of alkA transcription. J Bacteriol Celecoxib 1999, 181:6836–6839.PubMed 21. Landini P, Volkert MR: Regulatory responses of the adaptive response to alkylation damage: a simple regulon with complex regulatory features. J Bacteriol 2000, 182:6543–6549.CrossRefPubMed 22. Blattner FR, Plunkett G III, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick
HA, Goeden MA, Rose DJ, Mau B, Shao Y: The complete genome sequence of Escherichia coli K-12. Science 1997, 277:1453–1469.CrossRefPubMed 23. Hengge-Aronis R: Signal transduction and regulatory mechanisms involved in control of the σ S (RpoS) subunit of RNA polymerase. Microbiol Mol Biol Rev 2002, 66:373–395.CrossRefPubMed 24. Neidhardt FC, Curtiss R III, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Scharchter M, Umbarger HE: Escherichia coli and Salmonella: cellular and molecular biology ASM Press, Washington DC. 1996, 2277–2294. 25. Chilcott GS, Hughes KT: Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli. Microbiol Mol Biol Rev 2000, 64:694–708.CrossRefPubMed 26. Ninfa EG, Stock A, Mowbray S, Stock J: Reconstitution of the bacterial chemotaxis signal transduction system from purified components.